Sander Tan's repositories
clinical-data-tcga-pancancer
Code to transform all clinical data for TCGA Pan Cancer studies to cBioPortal format
gsva-analysis
Scipts and (some) data from GSVA analysis performed
cbioportal
cBioPortal for Cancer Genomics
cbioportal-docker
Context to create cBioPortal docker images
cbioportal-validation-demo
Example commands and portal info for demo purposes
cbioportal_gsva
Scripts that calculate GSVA scores for cBioPortal expression files
CogStack-NiFi
Building data processing pipelines for documents processing with NLP using Apache NiFi and related services
datahub
The Metadata Platform for the Modern Data Stack
deduce
Deduce: de-identification method for Dutch medical text
docker-gistic2
Dockerfile to create a container with GISTIC2 (2.0.23)
docusaurus
Easy to maintain open source documentation websites.
Example
Example repo with capital letter in name to reproduce bug in PIP
great_expectations
Always know what to expect from your data.
MiniSynapse
Lightweight Razer Peripheral Initialization
Mssql-docker-initialization-demo
Demonstration of Microsoft SQL Server on Linux in a Docker container with creating example database after initialization.
mutation-frequency-dashboard
Mutation Frequency Dashboard to display how often specific genes are mutated among different types of cancers in patients that are profiled in the TCGA PanCancer project.
roslin-targeted-variants
Roslin is a portable and reproducible workflow infrastructure for Cancer Genomic Sequencing Analysis
wikiextractor
A tool for extracting plain text from Wikipedia dumps