Samuel Lab at Harvard University's repositories
mindcontrol
MindControl closed-loop computer vision software to manipulate neural activity in a freely moving C. elegans.
InterProcess
A compact C library to share data between processes on Windows. Fast. Simple
MAGATAnalyzer
Multi Animal Gait and Track Analyzer
mindcontrol-analysis
Analysis Software for the mindcontrol output
MindControlAccessUtils
MATLAB scripts to read in YAML output created by MindControl software.
colbert.physics.harvard.edu
Home Page for the CoLBeRT project
Marc-TicToc
timer for c/c++ applications
AndyTrackFeatureGUI
A small MATLAB GUI framework for supervised image processing.
EarlyVersionWormTracker
Damon Clark's MATLAB worm tracker analysis software from 2004.
Larval-ORN
Code and data for the paper of 'Structured odorant response patterns across a complete olfactory receptor neuron population'
MAGATAnalyzer-Example-Data
Example image stacks (can be read using MMF-StaticBackgroundCompressor software) of Drosophila larvae navigating ethyl actetate gradients in LADY GAGA apparatus.
MAGATAnalyzer-Matlab-Analysis
Analyzes larval behavior from track files created by MAGATAnalayzer-Track-Extraction or (very beta) the multi worm tracker
MAGATAnalyzer-Track-Extraction
C++ and Labview (optional) software to extract tracks from video of moving animals
megabackup
Andy's mega backup scripts
MMF-StaticBackgroundCompressor
Implements a simple compressions system for movies where only small parts change from frame to frame.
Multi-Worm-Tracker--modified-for-MMFs
a version of Rex Kerr's multi worm tracker that can read compressed files generated by the Samuel lab's software
FTC200-MATLAB
MATLAB routines and GUI to connect to an FTC200 TEC Temperature Controller's serial interface