samsledje

ConPLex

Adapting protein language models and contrastive learning for highly-accurate drug-target interaction prediction.

D-SCRIPT

A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions

ConPLex_dev

EHRport

Your Data. Your Doctors.

HamSandwichViz

Visualization of the Ham Sandwich Theorem and algorithm for the plane

samsledje.github.io

Personal website for Sam Sledzieski

TreeFix-TP

Phylogenetic error correction using a transmission-aware cost function

ablm

Protein language model customized for antibodies

AdventOfCode

als_regulation_20440

A multi-omics approach to mapping genetic dysregulation in Amyotrophic Lateral Sclerosis (ALS)

compbio

Python libraries and utilities for computational biology

DomainBed

DomainBed is a suite to test domain generalization algorithms

evolocity

Evolutionary velocity with protein language models

Ohno

Code that prints "Oh no" when you run it, and makes you say "Oh no" when you read it

Pseudotemporal_GRN_Learning

python-package-template

🚀 Your next Python package needs a bleeding-edge project structure.

rapppid

Regularised Automatic Prediction of Protein-Protein Interactions using Deep Learning

rosalind

Bioinformatics problems from rosalind.info

SaML-Lib

A place for me to practice implementation of machine learning algorithms

TDC

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Drug Discovery and Development