samesense

bixtools

🐳 Dockerfiles for bioinformatics tools

bfx-docker

Bioinformatics dockerfiles

blog

hugo blog

bq-genomics-tools

conda-activator-py

containers

Bioinformatics containers

cromwell-monitor

Generate stats for Cromwell task calls including resource utilization & estimated costs

cx30

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

gatk4-genome-processing-pipeline

Workflows used for processing whole genome sequence data + germline variant calling.

gatk4-germline-snps-indels

Workflows for germline short variant discovery with GATK4

genbq

home-manager-configuration

Ryan's crazy Home Manager setup! :-D

Iterative_masking

Iterative masking algorithm on MSA Transformer to generate synthetic sequences

kickstart.nvim

A launch point for your personal nvim configuration

linkinbio

linkinbio ig landing page

links

Weekly week dumps

m6a

Reproduction/refactor of Dominissini et al Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

migrate-wdl

Convert Broad wdl pipelines to VPC GCP

minimal

A minimal Python package.

python-bmpr

python-bumper

python-cath

Concatenate files w/ headers

samesense

Hugo web site

sircel

Identify cell barcodes from single-cell genomics sequencing experiments

sm-template

Snakemake project template

swarm-gpt-data

Process foursquare data

working

yt-eda

Explore content of saved youtube vids

zyrtec-log