Protein sequence embeddings for predicting protein-protein interactions.
to download the benchmarking datasets you need to run the download script as follows:
sh ./scripts/download_data.sh
This will download and extract the hamp15
, you14
and swissprot-ppi
benchmarking datasets to the data
directory.
Before using the
proseq2vec-ppi
model you will need to install theproseq2vec
package. Also, if you want to use any of the benchmarking datasets wou need to download these benchmarks as shown in the previous sections.
There are multiple examples that demonstrate simple use cases for using the proseq2vec-ppi
model to predict
protein-protein interaction data in the examples
directory, please check the basic example at ./examples/basic_example.py
.