said3427 / GSoC

GSoC

• A bash script with your StringTie v2 and Tablemaker commands.
• An R script with your Ballgown commands.
• The first 1000 lines of both GTF files generated using StringTie2.
• The first 1000 lines of the FPKM matrix produced by Ballgown, saved as a csv.

JupyterLab + Binder

To reproduce the code

• Open a Binder JupyterLab Session:
• Open a terminal
• Run the Code bash Code.sh