sahilseth

funr

Simple Utility providing Shell Access to all R Functions

RvsPython

A repo comparing syntax in R and Python for various tasks. Not comprehensive, but a subset of lines to get one started

bamreadcountr

wrapper and parser for bam readcount

params

Simplify parameters

bioreadr

Adding all readers of genomic tools

bioliners

bioinformatics oneliners

comut

ConsensusTME

ConsensusTME Gene Sets and R Script

containerrr

Singularity container R for HPC environments

covid-home-care-app

dnaseq_analysis

Packages, tips etc for analysis of WEX/WGS/Amplicon sequencing data

example-rmd-templates

A selection of minimal templates used to highlight R Markdown templates, as referred to in the "R Markdown Definitive Guide"

firebase

Authenticate Shiny Users with Firebase

genomic_datasets

R packages for various bioinformatics analysis

gganimate_df

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)

MultiAssayExperiment

Bioconductor package for management of multi-assay data

myplots

omics

phylowgs

Application for inferring subclonal composition and evolution from whole-genome sequencing data.

polysolver

PureCN

Copy number calling and variant classification using targeted short read sequencing

r_stats_and_plots

rocker

Rocker and related NGS containers

sahilseth.github.io

Tidbits from hacking and wrangling

shiny-google-auth

statistics

vbox_cheatsheet

cheatsheet for vboxmanage

vcfR

Tools to work with variant call format files

wranglr