sagar87

spatialproteomics

Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly multiplexed immunohistochemistry data. Docs available here: https://sagar87.github.io/spatialproteomics/ .

tensorsignatures

Tensorframework for mutational signature analysis.

genomicsurveillance

numgp

Gaussian Processes for NumPyro.

flask-react-app

Blueprint for projects in Flask and React.

scPCA

Single-cell PCA.

cca

Experimental code for bayesian canonical correlation analyses.

binarazor

codex

Scripts to analyse codex data.

codex-validator

comoros

covid19-web

covid19-web-1

dev-connect

EMBO-multi-omics-course

githubFinder

A small tutorial React project.

Huber-group-EMBL.github.io

Huber group public webpage

Mars

muon

muon is a multimodal omics Python framework

pyromaniac

Helper modules for pyro.

random-quote-generator

sagar87.github.io

Files needed to replicate my research blog

scCCA

Single-cell canonical correlation analysis - A generative probabilistic framework to integrate CITE-seq data. Some docs (and more following soon) here: https://sagar87.github.io/scCCA/.

spatialdata-plot

Static plotting for spatialdata

spatialdata-sandbox

streamlit-expense

streamlit-visualiser

tson2

ttd-fastapi

vitessce-demo-gh-pages