Saez Lab

visium_heart

Spatial transcriptomics of heart tissue

CARNIVAL

CAusal Reasoning for Network Identification with integer VALue programming in R

cosmosR

COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

MOFAcell

Code used for muti cellular factor analysis

MOFAcellulaR

R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)

flop

FunctionaL Omics Processing platform

scell_hfpef

single cell RNAseq analysis of HFpEF mice model

PerMedCoE_summer_school_2023

PerMedCoE summer school 2023

2023-SysBioCourse-ACSB

PerMedCoE_tools_virtual_course_2023

Material for the PerMedCoE virtual course: transcriptomics to mechanistic models of signalling.

scheduling

Repository to collect issues for events to be scheduled

astromouse

Spatial space data from mouse

COSMOS-TPP

repository to summarise COSMOS-TPP work

meta_PKN_BIGG

MOON_example

VectorGraphics

Collection of useful vector graphics to make figures.

CCC_Valencia_2023

Slides and materials for CCC workshop Valencia 2023

CCLE_footprints

CRCDiet

CRCDiet

DREAM_HF_microbiome

Predict incident risk for heart failure in human population studies by combining fecal microbiome composition and host information

eGFRslopes

flake8-kwargs-spaces

Flake8 plugin to check for spaces around equals sign when passing keyword arguments

GDSC_footprints

decoupleR footprints on GDSC basal expression dataset

nfcore-decoupler

Repository to host tool-specific module files for the Nextflow DSL2 community!

permedcoe

PerMedCoE

prot_met_workflow

proteomic/metabolomic generation workflow of Hell lab

pypath-common

Code shared across pypath modules

Reper_Pred

Spatial repertoire Prediction

snakemake-workshop

taipale_scrna-main