sachitsaksena

nfkb-tag-seq

Code for processing and analysis of TAGseq data in "The Effects of IKKβ Inhibition on Early NF-κB Activation and Transcription of Downstream Genes". Modified repository from https://github.com/z0on/tag-based_RNAseq.

sachitsaksena.github.io

Personal website hosted at: sachitsaksena.github.io. Blog posts by Jekyll. Custom layout using Tachyons CSS toolkit.

SeqGAN

Implementation of Sequence Generative Adversarial Nets with Policy Gradient

cycada_release

Code to accompany ICML 2018 paper

devenv

Personal developer environments

kunjapurdb

Example laboratory information system for synthetic biology strain/sequence management.

mit6874-2020

optical_flow

optical_flow2

Optical Flow with OpevCV from scratch

population-diffusions

Code and paper repository for the ICML paper "Learning population level diffusions with generative recurrent networks"

SGW

Code for Sliced Gromov-Wasserstein

splice

Predict exon skipping from CRISPR/Cas9 targeting of splice acceptor sites.

velocyto.py

RNA velocity estimation in Python

wot

A software package for analyzing snapshots of developmental processes