Sabiq Chaudhary's repositories
abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
align_pipeline
A pipeline of scripts to be used before using Align to align the reads
bioconda-recipes
Conda recipes for the bioconda channel.
eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
fletcher
Fletcher: A framework to integrate FPGA accelerators with Apache Arrow
helper_tools
Helper Tools in developmment for bigger tools
mean
MEAN.JS - Full-Stack JavaScript Using MongoDB, Express, AngularJS, and Node.js -
METEORE
Automatic DNA methylation detection from nanopore tools and their consensus model
modbamplots
Scripts to plot Methylation from Modbams
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nanopolish
Signal-level algorithms for MinION data
nanopore-SV-analysis
Structural variant filtering and anlaysis of Nanopore human WGS data.
NextflowModules
UMCU Genetics Nextflow modules
pipeline_nextflow
Analysis pipeline in Nextflow
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
sabiqali
Config files for my GitHub profile.
strdisc
STR Discovery Pipeline for Nanopore Reads
STRErrorRateCalc
To calculate the sequencing error rates of known STR loci
strview
A small tool to elaborate upon alignments between the read and reference around the STR region
test_data_distribution
test data distribution
vg
tools for working with genome variation graphs
WFA
Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment