Sandra AC's repositories
mammals_dating
Methods for the analyses described in Álvarez-Carretero, et al. 2022 (https://doi.org/10.1038/s41586-021-04341-1)
Tutorial_MCMCtree
MCMCtree tutorials
fasta-phylip-partitions
Convert from fasta to phylip format and generate partitioned data if needed
Morphometrics_practical
This is a repository containing the data set and the R script used to perform a Procrustes analysis (PA)
sabifo4.github.io
Personal website - computational molecular evolution & biopipelines
bs_inBV
A tool to help generate the file in.BV when using "complex" substitution models for MCMCTree. Particularly, the hessian is approximated by a bootstrap approach.
dosreislab.github.io
dos Reis Lab website
II_SRUK_Scientific_Computing
Material for the II edition of the SRUK Scientific Computing
mcmc-date
Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.
scientific_computing
Materials, examples and exercises for the SRUK Scientific Computing course