Beast code in Giters

Simon Andrews's repositories

FastQC

A quality control analysis tool for high throughput sequencing data

Language:JavaGPL-3.0403 13 119

sradownloader

A script to make downloading of SRA/GEO data easier

Language:PythonGPL-3.027 6 22

nextflow_pipelines

The set of NGS processing pipelines used at Babraham

Language:NextflowGPL-3.08 5 14

sierra

A sequencing facility LIMS system

Language:PerlGPL-3.04 6 18

illuminaprocessing

The scripts for doing automated run processing from our sequencing facility

Language:PerlNOASSERTION2 60

autosftp

An automated data transfer system

Language:PythonGPL-3.01 2 11

bioinformaticsrates

A record of bioinformatics hourly rates for core facilities

Language:HTMLGPL-3.01 20

canonicalsplicecount

A program to quantitate RNA-Seq data based on the presence of canonical splice sites

Language:PythonGPL-3.0100

dedupcheck

A quick and dirty check for duplicate files in a large filesystem

Language:PythonGPL-3.0100

autoalign

A web based tool for aligning nanopore PCR fragment sequencing

Language:PythonGPL-3.002 11

aws_training_images

A set of build scripts to generate AWS instances ready to run our training courses

Language:ShellGPL-3.003 12

beatbox

Analysis and visualisation of celluar beating patterns

Language:JavaGPL-3.002 4

BilbORF

R package for performing differential ORF usage analysis

Language:RMIT010

bugtest

A temporary repository to try to reproduce a bug

Language:Shell000

capstone_monitor

A system to monitor activity on the capstone cluster

Language:PythonGPL-3.002 15

gearcluster

Code and documentation for the gear cluster

Language:ShellGPL-3.0020

groupactivity

A web based system to record the activities undertaken by people in a group

Language:PythonGPL-3.0000

imagetrack

An imaging facility LIMS system

Language:JavaScriptGPL-3.003 13

Labrador

A web based tool to manage and automate the processing of publicly available datasets.

Language:PHPGPL-3.0030

Librarian

A tool to predict the sequencing library type from the base composition of a supplied FastQ file.

Language:RustGPL-3.0010

nexons

A pipeline for quantitating transcript level abundances from nanopore sequence data

Language:PythonGPL-3.003 10

randomcoffee

A web interface for arranging random coffee meetings

Language:CSSGPL-3.0000

replacementcircles

A program to identify mis-recombined VDJ sequences

Language:PythonGPL-3.0000

size_factor_demo

Code from the Bitesize Bioinformatics tutorial on size factor normalisation in R

Language:HTMLGPL-3.0020

species_specific_peptides

Code to generate stats and data on species specific peptides

GPL-3.0020

symlink2text

A program to convert symlinks to text files

Language:PythonGPL-3.0020

TrAEL-seq

A collection of software for processing TrAEL-Seq data

Language:Python020

transposoncds

A program to find coding sequences in genomic transposons

Language:PythonGPL-3.0010

websystembase

A web based system to record the activities undertaken by people in a group

Language:PythonGPL-3.0000

windmillcam

The capture code for the Burwell Museum windmill cam

Language:PythonGPL-3.0000