ryrl's repositories
chip-seq-pipeline2
ENCODE ChIP-seq pipeline
Hyper-editing
Hyper-editing
AI-For-Beginners
12 Weeks, 24 Lessons, AI for All!
alphafold
Open source code for AlphaFold.
alu-detect
aludetect
AluMine
Scripts for discovery and genotyping polymorphic Alu element insertions in human genomes
bedops
:microscope: BEDOPS: high-performance genomic feature operations
ChIPseqSpikeInFree
A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications
deepTools
Tools to process and analyze deep sequencing data.
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
igv-webapp
IGV Web App
JACUSA2helper
Auxiliary R package for assessment of JACUSA2 results
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
REDITs
RNA editing tests
RNAEditingIndexer
A tool for the calculation of RNA-editing index for RNA seq data
TRUST4
TCR and BCR assembly from RNA-seq data