Russell Neches's repositories
SummonUndead
A Jupyter magic for raising an undead army of cells on a slurm-managed supercomputer.
soilvirome
Analysis for soil virome project
CoronaARG
Ancestral recombination among the Coronaviridae
DeepVirFinder
Identifying viruses from metagenomic data by deep learning
FavoriteThings
A collection of some of my favorite things
iqtree2
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
Mastodon-OpenScience
Tool to bulk follow accounts related Open Science on Mastodon. Runs at https://germanrepro.github.io/Mastodon-OpenScience/ Based on the DIY webapp to bulk follow sociological accounts on Mastodon by David Adler, Thomas Haase & Hendrik Erz.
metasub
Analysis of viral biogeography in urban metagenomes (MetaSUB project)
panoptes
Monitor computational workflows in real time
pcm
A textbook for phylogenetic comparative methods.
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
TargetP-2.0
Detecting Sequence Signals in Targeting Peptides Using Deep Learning
Taxonomy.jl
Julia package to handle NCBI-formatted taxonomic databases.
toytree
A minimalist tree plotting library using toyplot graphs
VirSorter2
customizable pipeline to identify viral sequences from (meta)genomic data