Giters
Russell Neches (ryneches)

ryneches

Geek Repo

70

followers

47

following

142

stars

Company:Kyoto University

Location:京都, 日本

Home Page:http://vort.org

Twitter:@ryneches

Github PK Tool:Github PK Tool

Russell Neches's repositories

SuchTree

A Python library for fast, thread-safe computations on phylogenetic trees

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:26Issues:4Issues:18

fishpoo

A study of gut microbial communities of Tanganyikan cichlids

Language:Jupyter NotebookStargazers:2Issues:3Issues:0

kizuchi

A `snakemake` workflow for building gene trees

Language:PythonLicense:BSD-3-ClauseStargazers:2Issues:3Issues:10

ryneches

Russell's personal repository

Stargazers:2Issues:2Issues:0

SummonUndead

A Jupyter magic for raising an undead army of cells on a slurm-managed supercomputer.

Language:PythonLicense:BSD-3-ClauseStargazers:2Issues:3Issues:3

evo_decal

Some awesome decals representing imporant developments in evolutionary biology.

Stargazers:1Issues:3Issues:0

shoephone

Community analysis of cell phones and shoes : Project MERCCURI

Language:Jupyter NotebookStargazers:0Issues:0Issues:0

soilvirome

Analysis for soil virome project

Language:Jupyter NotebookStargazers:0Issues:3Issues:0

TOLiver

Exploring the Tree of Life

Language:Jupyter NotebookLicense:BSD-2-ClauseStargazers:0Issues:0Issues:0

argweaver

Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)

Language:C++License:MITStargazers:0Issues:0Issues:0

CoronaARG

Ancestral recombination among the Coronaviridae

Language:HTMLStargazers:0Issues:0Issues:0

DeepVirFinder

Identifying viruses from metagenomic data by deep learning

Language:PythonLicense:NOASSERTIONStargazers:0Issues:0Issues:0

DendroPy

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

Language:PythonLicense:NOASSERTIONStargazers:0Issues:1Issues:0

FavoriteThings

A collection of some of my favorite things

License:BSD-3-ClauseStargazers:0Issues:2Issues:0

jigs

3D printable jigs for various things, mostly woodworking

Language:OpenSCADStargazers:0Issues:0Issues:0

ManyTrees

So, I heard you like coevolution...

Language:Jupyter NotebookStargazers:0Issues:0Issues:0

Mastodon-OpenScience

Tool to bulk follow accounts related Open Science on Mastodon. Runs at https://germanrepro.github.io/Mastodon-OpenScience/ Based on the DIY webapp to bulk follow sociological accounts on Mastodon by David Adler, Thomas Haase & Hendrik Erz.

Language:HTMLLicense:GPL-3.0Stargazers:0Issues:1Issues:0

metasub

Analysis of viral biogeography in urban metagenomes (MetaSUB project)

Language:Jupyter NotebookStargazers:0Issues:0Issues:0

networkx

Network Analysis in Python

Language:PythonLicense:NOASSERTIONStargazers:0Issues:2Issues:0

panoptes

Monitor computational workflows in real time

Language:CSSLicense:MITStargazers:0Issues:0Issues:0

pcm

A textbook for phylogenetic comparative methods.

Language:HTMLLicense:NOASSERTIONStargazers:0Issues:0Issues:0

rms-open-letter.github.io

Stargazers:0Issues:0Issues:0

shell-genomics

Language:PythonLicense:NOASSERTIONStargazers:0Issues:0Issues:0

slurm-magic

IPython magic for SLURM.

Language:PythonLicense:NOASSERTIONStargazers:0Issues:3Issues:0

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

Stargazers:0Issues:0Issues:0

TaigParts

Stuff for the Taig II Micro-lathe

Language:OpenSCADStargazers:0Issues:3Issues:0

TargetP-2.0

Detecting Sequence Signals in Targeting Peptides Using Deep Learning

License:NOASSERTIONStargazers:0Issues:0Issues:0

Taxonomy.jl

Julia package to handle NCBI-formatted taxonomic databases.

Language:JuliaLicense:MITStargazers:0Issues:0Issues:0

VirSorter2

customizable pipeline to identify viral sequences from (meta)genomic data

Language:PythonLicense:GPL-2.0Stargazers:0Issues:2Issues:0

vort.org

Pelican stuff for Vort.org

Language:Jupyter NotebookStargazers:0Issues:3Issues:1