ryanlayer

samplot

Plot structural variant signals from many BAMs and CRAMs

giggle

Interval data structure

gqt

A genotype query interface.

stix

Structural Variant Index

svv

Stupid Simple Structural Variant View

ssshtest

Stupid Simple (ba)Sh Testing - A functional software testing framwork

ssec2

Stupid Simple Elastic Compute Cloud

cs

Data structures and algorithms

cmd2web

Create web interfaces for command line utilities.

COvid19

Providing social distancing situational awareness during the COVID-19 pandemic in Colorado

stix_paper

Analysis for the STIX paper

tools

Smaller projects

1000Genomes_data_indexes

The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource

algorithms

animal_svs

ci

Continuous Integration

class_test

eihgpong

EIGH Pong

git_grading_test

github-markdown-toc

Easy TOC creation for GitHub README.md

go-giggle

golang wrapper to giggle

inheritance

inheritance models for mendelian diseases

minima

Minima is a one-size-fits-all Jekyll theme for writers.

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

new_repo

SWE4S tests (python)

PlotCritic

python-giggle

python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.

sdlgks-dlagkfals

software-project

Short description that will help you and others find this

SV-plaudit

Pipeline for structural variant image curation and analysis.