Ryan Yancey's repositories
advanced-pccb
Documents generated from the Summer 2021 Advanced PCCB course, JHU MS Bioinformatics
annotatr
Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.
aws-s3-glacier-restore
Helper script to easily restore files on S3 with Glacier storage class.
bedtools2
bedtools - the swiss army knife for genome arithmetic
courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
datascience-coursera
Linking datascience-coursera Rproject with GitHub
datasharing
The Leek group guide to data sharing
ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
gedav
A repo of files and scripts generated in Summer 2021 Gene Expression Data Analysis and Visualization, JHU MS Bioinformatics
python-data-science
Files and scripts generated from LinkedIn Learning's Master Python for Data Science course.
Rosalind
A collection of answers for the Rosalind problems
Final-Portfolio
A collection of miscellaneous scripts
first-contributions
🚀✨ Help beginners to contribute to open source projects
getting-started
Getting started with Docker
misc-python
Miscellaneous Python projects
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
move-wsl
Easily move your WSL distros VHDX file to a new location.
multi-package-containers
Testing building mulled containers for multi-requirement tools.
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
nextflow-tutorial
Nextflow training material for introductory tutorial
nxf-datasets
A collection of data to use to test Nextflow pipelines
plotnine
A grammar of graphics for Python
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
RRBSsim
RRBSsim: reduced representation bisulfite sequencing simulator for next-generation sequencing
test-datasets
Test data to be used for automated testing with the nf-core pipelines
UXM_deconv
UXM fragment-level deconvolution algorithm
wgbs_tools
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies