Robert W Murdoch's repositories
argonnesoils2017tutorial
repo for 2016 EDAMAME tutorials
Bladder_Affymetrix_2018
Analysis of Affymetrix data using the R limma package for the 2018 bladder chemotherapy project
Co1_library_processing
A set of Qiime2 and R scripts that process Co1 datasets, assuming that a Co1 classifier is on-hand
Co1_zeale_qiime2
A simplified qiime2 pipeline for processing Zeale-primer Co1 amplicon data
Manneheimia
Description of pipeline for processing of Mannheimia amplicon library
minion_qc
Quality control for MinION sequencing data
population.gene.trees
some template scripts for looping through sets of genes/proteins across a population (as part of a resequencing project), building and trimming alignments and build simple phylogenetic trees
r-novice-gapminder
Introduction to R for non-programmers using gapminder data.
shell-novice
Software Carpentry introduction to the shell for novices.
SUPER-FOCUS
A tool for agile functional analysis of shotgun metagenomic data
trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly