Beast code in Giters

Russell Corbett-Detig's repositories

Ancestry_HMM

Language:CGPL-3.025 5 19

SELAM

Simulation of Epistasis Local adaptation, with Ancestry and Mate choice

Language:C++GPL-3.010 60

vcf2MK

Language:C++6 10

USHER_DEMO

5 20

MAP_SD

Language:C++2 20

Heterozygosity_HMM

Language:C++1 10

proximity_ligation_inversion_mapping

Language:Python1 2 1

artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

CC-BY-4.0000

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell000

comp-pop-gen

Automatic pipeline to go from SRA to vcfs

Language:Python010

comp_pop_gen_pipeline_development

Language:Python000

ConstantMarginalIterator

A class for iterating all non-negative integer valued matrices with fixed, given marginals.

Language:Python000

gene_family_evolution

Language:C++010

Int-HMM

GPL-3.0000

linked-selection

Language:R010

parsimony

Language:PureBasic000

Phylogenomic

Language:R000

sarscov2phylo

Global phylogenies of SARS-CoV-2 sequences

000

strain_phylogenetics

Language:PythonMIT000

systematic_error_workflow_example

000

tree_files

hosting tree files for ease

000

usher

Ultrafast Sample Placement on Existing Trees

Language:C++MIT000

VGsim

VGsim is a fast and scalable simulator of viral genealogies during global pandemic.

GPL-3.0000

wtdbg2

A fuzzy Bruijn graph approach to long noisy reads assembly

Language:CGPL-3.0010