rusher321

microbiotaPair

An R Package for Simplified Microbiome Analysis Workflows on Intervention Study

rmeta

collect the R function for daily work

inteSIN

integrated sample-specific inference networks

ReportScore

This package maybe useful for function enrichment analysis based ko profile

RNA-seq-2019nCov

RNA-seq pipeline

rusher321.github.io

SWEET_plus

Sample-specific weighted correlation network

deepPhage

DeepTools-Microbiome

A list of deeplearning tools for metagenome data analysis

MetaVis

high quality and reproducible visualization

metaindex

integrated microbial index

Metasimu

A R package for simulate the metagenomic profile data

AiLearning

AiLearning: 机器学习 - MachineLearning - ML、深度学习 - DeepLearning - DL、自然语言处理 NLP

blogR

A blog to intergrate information and knowledge

chinese-independent-blogs

中文独立博客列表

inStrain

Bioinformatics program inStrain

KU-NGS

The material is from the KU course:Advanced methods for analysis of next generation sequencing data

learning_python

learn python quickly

MNLCor

Metabiome Nonlinear correlation

nCoV_Meta

Pipeline for HCoV-19 genome analyzing

OAD_Microbiota

Python_tools

collect python litter functions

quantpi

Microbiome profiling

r-data-practice

R语言数据操作练习

Rtemplate

A R package template

spateo-release

Spatiotemporal modeling of spatial transcriptomics

StrainPanDA

A method for reconstruction of subspecies composition and functional profiles from metagenomic data

taxa

taxonomic classes for R

Tools-Microbiome-Analysis

A list of R environment based tools for microbiome data exploration, statistical analysis and visualization

useful-tools

A list of useful tools and programs for developers, DevOps and SysAdmins