Ruixiang Liu's repositories
agricolaeplotr
A repository for agricolaeplotr package
ALLHiC
ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
bingo
Bingo，一个让你呼吸顺畅 New Bing。
BioImageAnalysisNotebooks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
blupADC
blupADC:An useful tool for animal and plant breeding
CareGPT
🌞 CareGPT (关怀GPT)是一个医疗大语言模型，同时它集合了数十个公开可用的医疗微调数据集和开放可用的医疗大语言模型，包含LLM的训练、测评、部署等以促进医疗LLM快速发展。Medical LLM, Open Source Driven for a Healthy Future.
CC2023-QG
Practical on quantitative genetics
ChatReviewer
ChatReviewer: 使用ChatGPT分析论文优缺点，提出改进建议
chroma
A generative model for programmable protein design
delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
DNNGP
DNNGP: Deep neural network for genomic prediction
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
gpt-pilot
Dev tool that writes scalable apps from scratch while the developer oversees the implementation
gpt4all
gpt4all: open-source LLM chatbots that you can run anywhere
HDL
High-definition likelihood inference of genetic correlations (HDL)
hello-algo
《Hello 算法》：动画图解、一键运行的数据结构与算法教程，支持 Java, C++, Python, Go, JS, TS, C#, Swift, Rust, Dart, Zig 等语言。
IIIVmrMLM
The R and C++ tools associated with 3VmrMLM, a comprehensive GWAS method for dissecting quantitative traits
paperify
Transform any document, web page, or eBook into a research paper (ChatGPT not required)
ParmEd
Parameter/topology editor and molecular simulator
PopGenPipe
Population Genomics Pipeline used for SNPs data from VCF files.
PRScs
Polygenic prediction via continuous shrinkage priors
RagTag
Tools for fast and flexible genome assembly scaffolding and improvement
screenshot-to-code
Drop in a screenshot and convert it to clean HTML/Tailwind/JS code
sgn
The code behind the Sol Genomics Network, Cassavabase and BreeDBase websites
SNEEP
SNp Exploration and Analysis using EPigenomics data
SoftwareKG-PMC-Analysis
Code to create and analyze SoftwareKG, a Knowledge Graph of Software Mentions over PMC articles
TELR
TELR is a fast non-reference transposable element detector from long read sequencing data.
TIDDIT
TIDDIT - structural variant calling
toulligQC
A post sequencing QC tool for Oxford Nanopore sequencers
trackplot
trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.