Roberto Siani's repositories

AVX_PGC

Script of R.Siani for "Acidovorax pan-genome reveals specific functional traits for plant beneficial and pathogenic plant-associations".

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CoMet

An opinionated R script for Comparative Metataxonomy

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DivNet

diversity estimation under ecological networks

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mixed_helper_scripts

A small repo for non-organized, mixed scripts that I use in the lab

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nerdOut

Analysis for FitNotes exported data (.csv)

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OGFilter

A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria

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orthofinder-tools

Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to roary_plots

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tramadol_barley_2021

Supplemental scripts and data structures

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