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Riccardo Pianezza (rpianezza)

rpianezza

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Company:PopGen Vienna

Location:Vienna

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Riccardo Pianezza's starred repositories

RepeatMasker

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

Language:PerlLicense:NOASSERTIONStargazers:227Issues:6Issues:256

gargammel

gargammel is an ancient DNA simulator

Language:C++License:GPL-3.0Stargazers:25Issues:4Issues:15

GenomeDelta

Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads

Language:ShellLicense:NOASSERTIONStargazers:8Issues:1Issues:0

dmel_TE_invasions

Language:PythonStargazers:3Issues:2Issues:0

pannagram

Language:RStargazers:3Issues:0Issues:0

LTRtoTE

This program uses the LTR of a retrotransposon to find the copies in a genome and the possible target site duplications

Language:PythonLicense:GPL-2.0Stargazers:1Issues:1Issues:0

TIRtoTE

Language:PythonLicense:GPL-2.0Stargazers:1Issues:1Issues:0

Wien_Talks

Language:Jupyter NotebookStargazers:1Issues:1Issues:0