rpadmanabhan

lazygit

simple terminal UI for git commands

gym

A toolkit for developing and comparing reinforcement learning algorithms.

helix

A post-modern modal text editor.

poetry

Python packaging and dependency management made easy

pytudes

Python programs, usually short, of considerable difficulty, to perfect particular skills.

pyscript

Try PyScript: https://pyscript.com Examples: https://tinyurl.com/pyscript-examples Community: https://discord.gg/HxvBtukrg2

codon

A high-performance, zero-overhead, extensible Python compiler using LLVM

stable-baselines3

PyTorch version of Stable Baselines, reliable implementations of reinforcement learning algorithms.

pyro

Deep universal probabilistic programming with Python and PyTorch

atomic_queue

C++ lockless queue.

isa-l

Intelligent Storage Acceleration Library

dynamax

State Space Models library in JAX

Copulas

A library to model multivariate data using copulas.

CellBender

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

forge

High Performance Visualization

chromap

Fast alignment and preprocessing of chromatin profiles

pthash

Fast and compact minimal perfect hash functions in C++.

WFA2-lib

WFA-lib: Wavefront alignment algorithm library v2

amazon-genomics-cli

astar-pairwise-aligner

A pairwise sequence aligner written in Rust

HPDevOne

The HP Dev One Guide

Lighter

Fast and memory-efficient sequencing error corrector

catch

A package for designing compact and comprehensive capture probe sets.

unialigner

mixedvines

Python package for canonical vine copula trees with mixed continuous and discrete marginals

kseqpp

Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)

FQFeeder

Self-contained, multi-threaded fasta/q parser

airr-standards

AIRR Community Data Standards

tatami

C++ API for various matrix types.

ngs-performance-choices

Which tools to choose based on various performance metrics.