Breeshey Roskams-Hieter's repositories
ChIP-seq-pipeline
This is a pipeline to run basic Chromatin immunoprecipitation sequencing analysis for single-end or paired-end data.
Language:Shell000
Co-culture-Bulk-RNA-seq-pipeline
This is a pipeline to run basic RNA-seq analysis for single-end data.
Language:R000
gimmemotifs
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
Language:PythonMIT000
lift-over-nf
Nextflow pipeline using the ucsc liftOver tool to translate bedfiles from one reference genome to another.
Language:NextflowMIT000
liftOverPlink
A wrapper for liftOver for converting plink genotype data between different genome reference builds
Language:PythonGPL-2.0000
Omics-resources
Pipeline to assess quality of Omics datasets
Language:Jupyter Notebook000