Roshan Shrestha's repositories
jekyll-now
Build a Jekyll blog in minutes, without touching the command line.
minimal
Minimal is a Jekyll theme for GitHub Pages
go-go-ghpages
an intro workshop about github pages and jekyll
PythonCodecademyAnswers
Codecademy Python solutions- Answers are recommended for who can't pass the exercises
membrane-proteins
For the MD simulation of membrane proteins
carlnotsagan.github.io
homepage of Carl Fields
tf_metadynamics
Using neural networks for enhanced sampling in computational biophysics
scipro-primer
Software and additional material for the book "A Primer on Scientific Programming with Python"
create-simple-gui-applications
Create Simple GUI Applications with Python & Qt
scipy-2017-cython-tutorial
Material for the SciPy 2017 Cython tutorial
trieste2017
Material related to the plumed2017 event
programs
My programs for Computational Physics
VSS
Virtual Substitution Scan -- a plugin for VMD plateform
ASU-PHY494
Class web pages for Spring 2017 ASU PHY494 Computational Methods in Physics.
CMPyMOL
CMPyMOL is an add-on software to molecular visualization program PyMOL. It combines the protein 3D visualization capabilities of PyMOL and the protein's 2D contact map with an interactive interface for scientific analysis. This software is freely distributed under the MIT license for Windows, Linux and Mac OS X platforms.
sklearn_pycon2015
Materials for my Pycon 2015 scikit-learn tutorial.
tutorial-namd
Run a molecular dynamics simulation using NAMD
PHY494-resources-2016
Resources for ASU PHY494 (Spring 2016)
OpenMMTuts
Copy of https://simtk.org/docman/?group_id=161
Numpy-Tutorial-SciPyConf-2016
SciPy 2016 NumPy tutorial
cg2at-traj
Convert a coarse-grained molecular dynamics trajectory to an all-atom trajectory
molmod-data
Data files for the molecular modelling course
persistence_length_tutorial
Calculate the persistence length of polymers using MDAnalysis
making-prettier-plots
a quick primer on making prettier (and more impactful) plots
IntroToBiophysics
Introduction to Biophysics, requires one semester of calculus-based Physics.
pymol-animations
Tutorials and examples for nicer animations (movies) and images in PyMOL.
simple-membrane-protein-analysis
This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.
rosalind
Code for BUGSS bioinformatics class
scipy-lecture-notes
Notes used to give tutorials (for example at Euroscipy 2010/2011)