roryk

resume.github.com

Resumes generated using the GitHub informations

annotated_deep_learning_paper_implementations

🧑‍🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

OpenBBTerminal

Investment Research for Everyone, Everywhere.

doomemacs

An Emacs framework for the stubborn martian hacker

notion-py

Unofficial Python API client for Notion.so

notion-sdk-py

The official Notion API client library, but rewritten in Python! (sync + async)

setup-gcloud

A GitHub Action for installing and configuring the gcloud CLI.

chatgpt-shell

ChatGPT and DALL-E Emacs shells + Org babel 🦄 + a shell maker for other providers

rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

miniwdl

Workflow Description Language developer tools & local runner

kb_python

A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing

fastq-pair

Match up paired end fastq files quickly and efficiently.

company-org-block

mgatk

mgatk: mitochondrial genome analysis toolkit

picasso

Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.

seqprop

Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor

aparent

APA Regression Net - Predict and Engineer Alternative Polyadenylation

CSGO-RankMe-stats

Application that displays stats from the Kento RankMe plugin

GeneLab-Training

A repository for GeneLab Training documentation.

scrna-parameter-estimation

Direct estimation of mean and covariance from single cell RNA seq experiments

hera-t

Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol

sars-cov-2-synthesis

Ginkgo SARS-CoV-2 synthesis efforts: overviews and data

hivmmer

Alignment and variant-calling pipeline for Illumina HIV sequences.

bcbio_docker

Automated Docker builds for bcbio

Mutational-Fitness-Effects

Scripts for simulations in "Most synonymous mutations in yeast are strongly non-neutral"

bcbio-utils

Helper scripts for bcbio-nextgen

bioshop

Bioinformatic Tool Shop

fatewheel

The IB Fate Wheel brought to Slack

umi_rx

Add RX tag to BAM file, from UMI read name

nics

An ancient internet chess server implementation compatible with the FICS protocol