roryk

ipython-cluster-helper

Tool to easily start up an IPython cluster on different schedulers.

tiny-test-data

Super small biological datasets for unit testing

Delicious

Source code to Delicious bookmarking site, pull requests welcome

chipseq-greylist

Python implementation of the GreyListChIP Bioconductor package

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

bik-manipulation

Training set of manipulated images from open access publications identified by Elisabeth Bik

bioconda-recipes

Conda recipes for the bioconda channel.

chainfiles

Chain files for use with liftOver and CrossMap

AoC2021

bcbio_docker

Automated Docker builds for bcbio

bcbio_validations

Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses

brushback

Does brushing back a batter help a pitcher on subsequent pitches to the outside of the plate?

citar

Emacs package to quickly find and act on bibliographic references, and edit org, markdown, and latex academic documents.

compute-gpu-installation

CrossMap

CrossMap is a python program to lift over genome coordinates from one genome version to another.

duphold

don't get DUP'ed or DEL'ed by your putative SVs.

dvc.org

🔗 DVC website and documentation

gffutils

GFF and GTF file manipulation and interconversion

ldc-feedstock

A conda-smithy repository for ldc.

mastermind

Find minimal colorings for immunostaining multiple celltypes simultaneously

MPRAflow

A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data

MultiQC_bcbio

MultiQC plugin for bcbio_nextgen pipeline

octopus

Bayesian haplotype-based mutation calling

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

r-readxl-feedstock

A conda-smithy repository for r-readxl.

readxl

Read excel files (.xls and .xlsx) into R 🖇

simdna

A python library for creating simulated regulatory DNA sequences

smrnaseq

A small-RNA sequencing analysis pipeline

TitanCNA

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

VEnCode