Rodrigo O. Polo's repositories
amr_one_health_2021
One Health Summer Institute's Introduction to Bioinformatics workshop. Session on Bioinformatics for AMR Research.
beebiome-data-portal
A resource for scientists and the general public on bee-associated microbes/viruses and their impact on bee health
enteroComp
Analysis of Enterococcus AST profiles and marker genes
amrplusplus_v2
MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-throughput sequencing data
FIELDimageR-Workshop-11
Workshop presented for NDSU Breeding Pipeline Database Managers. In this course, I went through the basic steps of the FIELDimageR pipeline showing how to evaluate and apply remote sensing data in plant breeding.
fishualize
The fishualize package provides color scales for plotting in R based on nature’s most stunning and colorful organisms: teleost fishes (with a few chondrichthyan cameos).
introduction_to_bioinformatics_wgs
Workshop for introduction to bioinformatics and whole genome sequence analysis
pipeline-v5
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
snakefiles
Snakefiles for reproducible analyses
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
source_attribution
Produce visualizations using R for source attribution analysis
strategie-devops-strategy
Stratégie DevOps - DevOps Strategy
tourmaline
Amplicon sequence processing workflow using QIIME 2 and Snakemake.
training-material
A collection of Galaxy-related training material
tripal-crop-docker
A fully provisioned Tripal site aimed at supporting crop-focused and breeding research.