Ron Finn's repositories
awesome-nextflow
A curated list of nextflow based pipelines
CCN_caiman_mesmerize_workshop_2023
Repo for CCN workshop on caiman and mesmerize in January 2023
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
devops-exercises
Linux, Jenkins, AWS, SRE, Prometheus, Docker, Python, Ansible, Git, Kubernetes, Terraform, OpenStack, SQL, NoSQL, Azure, GCP, DNS, Elastic, Network, Virtualization. DevOps Interview Questions
EvoBind
In silico directed evolution of peptide binders with AlphaFold
first-contributions
🚀✨ Help beginners to contribute to open source projects
knowledgebase
recipes that save time
ktplots
Some tools for plotting single-cell data
memos
An open source, lightweight note-taking service. Easily capture and share your great thoughts.
mne-python
MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
pulsar
A Community-led Hyper-Hackable Text Editor
Raymo111
My awesome profile README
sanbomics_scripts
scripts and notebooks from sanbomics
scanpy-tutorials
Scanpy Tutorials.
SCP
SCP provides a comprehensive set of tools for single cell data processing and downstream analysis.
seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
sequencework
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
seurat-disk
Interfaces for HDF5-based Single Cell File Formats
seurat-wrappers
Community-provided extensions to Seurat
single-cell-pseudotime
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
superset
Apache Superset is a Data Visualization and Data Exploration Platform
the-book-of-secret-knowledge
A collection of inspiring lists, manuals, cheatsheets, blogs, hacks, one-liners, cli/web tools and more.
training-collection
Collection of bioinformatics training materials
VITAE
Model-based Trajectory Inference for Single-Cell RNA Sequencing Using Deep Learning with a Mixture Prior
zellkonverter
Conversion between scRNA-seq objects