romy-vos

EntityLinking

HeteHG-VAE

Heterogeneous Hypergraph Variational Autoencoder for Link Prediction (T-PAMI 2021)

CausalPlayground

The CausalPlayground library serves as a tool for causality research, focusing on the interactive exploration of structural causal models (SCMs). It provides extensive functionality for creating, manipulating and sampling SCMs, seamlessly integrating them with the Gymnasium framework.

pykeen

🤖 A Python library for learning and evaluating knowledge graph embeddings

metafilter-apply

clep

🤖 A Python Package for generating new patient representations driven by data and prior knowledge

ADR-graph

Predicting adverse drug reactions from a knowledge graph

kgem-in-drug-discovery

Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence in the Life Sciences, 2022)

clinlp

A Python library for performing NLP on clinical text written in Dutch

torch-rgcn

A PyTorch implementation of the Relational Graph Convolutional Network (RGCN).

BioBLP

A Modular Framework for Learning on Multimodal Biomedical Knowledge Graphs

GAECDS

mpqe

"Answering queries over Knowledge Graphs with Graph Convolutional Networks" @ ICLR 2020 Workshop on Graph Representation Learning

hetionet

Hetionet: an integrative network of disease

Awesome-Knowledge-Graph-Reasoning

AKGR: Awesome Knowledge Graph Reasoning is a collection of knowledge graph reasoning works, including papers, codes and datasets

drugbank_xml2csv_python

Python script for processing DrugBank XML to MySQL-ready CSV files

BioNEV

Graph Embedding Evaluation / Code and Datasets for "Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations" (Bioinformatics 2020)

nsides-release

Analysis notebooks and database interaction scripts for the nsides project

PoLo

decagon

Graph convolutional neural network for multirelational link prediction

MINERVA

Meandering In Networks of Entities to Reach Verisimilar Answers