romainGuiet's repositories
napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
ASA
Bitmap morphometry of neuronal arbors through Sholl
BioImageAnalysisNotebooks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
BIOPLib
BIOPLib
documentation-imprimante-3d
Documentation sur l'utilisation des imprimantes 3D au Fablab Fribourg
EasyXT
EasyXT is an extension for Imaris
figure
An OMERO.web app for creating Figures from images in OMERO
imagej.github.io
The ImageJ wiki
microscopy-icons
Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/
MorphoLibJ
Collection of mathematical morphology methods and plugins for ImageJ
mpicbg
Fiji module for image transformation and related algorithms
multi_padlock_design
Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling
neubias_academy_biapy
NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
omnipose
Omnipose: a high-precision solution for morphology-independent cell segmentation
simple-omero-client
Maven project to easily connect to OMERO.
stardist
StarDist - Object Detection with Star-convex Shapes
SwissBIAS.github.io
Website for the SwissBIAS network: Swiss BioImage Analysts's network
tarrow
Time arrow prediction for live-cell microscopy
training-resources
Resources for teaching/preparing to teach bioimage analysis