Beast code in Giters

Rodolfo Jaffé's repositories

LanGen_pipeline

Suit of R-scripts to perform landscape genomic analyses

Language:RGPL-3.010 2 1

AmazonDeforestation

Data and R scripts accompanying the paper "Forecasting deforestation in the Brazilian Amazon to prioritize conservation efforts"

Language:HTMLBSD-3-Clause8 10

dredge_mc

Assess multicollinearity between predictors when running the dredge function (MuMIn - R)

Language:R2 10

qualis

R scripts for analyses and plots presented in the preprint "QUALIS: The journal ranking system undermining the impact of Brazilian science"

Language:RCC0-1.0100

runCS

Function to run Circuitscape from R (Linux only)

Language:R1 10

Data and R scripts accompanying the paper "Optimizing cave monitoring efforts: Insights from long-term data for tropical iron caves" by Leonardo Trevelin, Matheus Simoes, Xavier Prous, Thadeu Pietrobon, Iuri Viana Brandi & Rodolfo Jaffé.

Language:RBSD-3-Clause010

LanGen_pipeline_version2

Suit of R-scripts to perform landscape genomic analyses version 2

Language:RGPL-3.0000

Lplot

Local polynomial fitting (LOESS) of pairwise relatedness to pairwise geographic distance

Language:R010

Ne_StrataG.R

Script for estimating Effective Population Size (Ne) using Linkage Desequilibrium in StrataG package

Language:RGPL-3.0000

r2vcftools_basics

Example script showing how to check and visualize VCF files, filter sites and individuals, save filtered VCF files, calculate genetic diversity and differentiation metrics and convert to other formats.

Language:R000

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