Rohan Khera's repositories
awesome-ehr-deeplearning
Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.
CommonDataModel
Definition and DDLs for the OMOP Common Data Model (CDM)
COVID-19
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
CTGAN
Conditional GAN for generating synthetic tabular data.
deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
dicom-server
OSS Implementation of DICOMweb standard
docker-stacks
Ready-to-run Docker images containing Jupyter applications
ecg_plot
Plot standard multi lead ECG/EKG chart with Python
EconML
ALICE (Automated Learning and Intelligence for Causation and Economics) is a Microsoft Research project aimed at applying Artificial Intelligence concepts to economic decision making. One of its goals is to build a toolkit that combines state-of-the-art machine learning techniques with econometrics in order to bring automation to complex causal inference problems. To date, the ALICE Python SDK (econml) implements orthogonal machine learning algorithms such as the double machine learning work of Chernozhukov et al. This toolkit is designed to measure the causal effect of some treatment variable(s) t on an outcome variable y, controlling for a set of features x.
ETL-Synthea
Conversion from Synthea CSV to OMOP CDM
grf
Generalized Random Forests
handson-ml2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
Legend
An R package implementing Large-Scale Evidence Generation and Evaluation in a Network of Databases (LEGEND).
markdown-cheatsheet
Markdown Cheatsheet for Github Readme.md
mimic-code
MIMIC Code Repository: Code shared by the research community for the MIMIC-III database
ndc_map
Mapping U.S. FDA National Drug Codes (NDC) to Drug Classes and Codes
rohankhera
Config files for my GitHub profile.
ShinyDeploy
Shiny apps in this repository will be automatically deployed to the OHDSI Shiny server.
simclr
SimCLRv2 - Big Self-Supervised Models are Strong Semi-Supervised Learners
SkeletonComparativeEffectStudy
An R package that can be used as the starting point to implement a comparative effectiveness study.
tableone
Create "Table 1" for research papers in Python
tabnet
PyTorch implementation of TabNet paper : https://arxiv.org/pdf/1908.07442.pdf
tutorials
PyTorch tutorials.
WhiteRabbit
WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.