- re-run normalize to 3x3 makes AR process faster:
run_normalize3x3.m - run AR-6 model estimation:
run_AR6_job.m
Next steps use code in:
D:\Roee_Main_Folder\1_AnalysisFiles\Poldrack_RFX\Publish_Ready_Process\code\helper_function
3. run anatomical searchlight:
run_multi_t_non_directional_anatomical
Don't forget to change to to correct folder on line 5 of :
MAIN_doSearchLightCrossValFolds_Ht2_NewT2013_anatomical.m
And change lines 8, 11 in above file as well before running
4. Compute the pvalues from each subject:
calcPvalsAllSubs_ar3.m
5. Run prevelance estimate of replicability:
run_prevalance_estimates_replicability.m
6. compute the box plots:
figure;boxplot(allpvals) %box plots or pvals across subjects
figure;violin(sizesout)