rodoyle

decks

Public RevealJS decks

dotfiles

Dotfiles for Linux and OS X

Azimuth

Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency

big-search

Case Study in Python searching datasets larger than RAM.

bowtie

An ultrafast memory-efficient short read aligner

cas-offinder

An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.

consul-rust

Rust client libray for Consul HTTP API

dgcli

Command Line Client for DeskGen Platform

dgparse

Desktop Genetics Public Parser Library

dgvue

Desktop Genetics Vue.js Template Application

ethflow

Smart Contract "tollbooth" with an "expensive" Airflow/TensorFlow Oracle

git-tags-py

CLI for managing release tags in a Git repository

github-rust

A Rust GitHub v3 API client.

guide-cluster

Guide RNA Clustering Example

GUIDES

A new workflow for the custom design of CRISPR libraries.

haystack

Searchable collections of items (haystacks) with a common interface

mal

mongo-rust-driver

Mongo Rust driver built on top of the Mongo C driver

open-guide-picker

Source Code for Guide Picker, In Press

prezto

Fork of prezto with local conf changes

py-evm

A Python implementation of the Ethereum Virtual Machine

pyethapp

PyVCF

A Variant Call Format reader for Python.

reveal-boilerplate

Boilerplate for slides with reveal.js

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

rust-openssl

OpenSSL bindings for Rust

salt

Software to automate the management and configuration of any infrastructure or application at scale. Get access to the Salt Open software package repository here:

suffix

Fast suffix arrays for Rust (with Unicode support).

swipe

Smith-Waterman database searches with inter-sequence SIMD parallelisation