Rob Munn's repositories
Data_analysis_tools
Tools used for data analysis during my postdoc - code to analyse speed-encoding, head direction encoding, and grid cells as well as theta LFP
asympPDC
The asympPDC Package is a MATLAB and Octave package for Partial Directed Coherence (PDC) and Directed Transfer Function (DTF) estimation with asymptotic statistics, allied functions and routines for Granger Causality Test and results pretty plotting.
Axona_Analysis_Gui
Development of a gui that lets you do various levels of analysis from raw axona output
axona_io
Matlab Input/Output functions for the AXONA E-Physiology system
bayesian-position-decoding
applies bayesian population decoding of the electrophysiological activity of place cells in order to estimate position
Bursting_Analysis
Code used to find bursts in spiketrains and then produce behavioral correlates for the full train vs. just the bursts. Bursts are defined as any spike preceded by at least 300ms quiescence and followed by at least one other spike within 300ms
CMBHOME
MATLAB Package for Neural Data
gramm
Gramm is a complete data visualization toolbox for Matlab. It provides an easy to use and high-level interface to produce publication-quality plots of complex data with varied statistical visualizations. Gramm is inspired by R's ggplot2 library.
gridcells
Grid cell data analysis package.
mec-reward-remapping
Code for Butler, Hardcastle, Giocomo 2019
mle_rhythmicity
An improved method for examining neural single unit rhythmicity using maxmimun likelihood estimation for a parametric distribution of lags.
Pass_Index
Implementation of the pass index technique for looking at open-field phase precession.
Projects
Code Samples
SiliconProbeCode
Contains a bunch of general purpose functions for processing data from Neuropixel and Cambridge Neurotech probes