robertvi

rjv

some bioinformatics related python scripts and libraries

rjvutils

some utilities I wrote

cell_mesh_2

A 3D model of cells growing

hpc-www

kmerz

kmer analysis tools written in Python and C++

mempack

Membrane alpha helix packing and orientation predicrtor

metabolism_model

A simple spatially embedded model of cells competing for space using a metabolism model that allows conservation of mass, photosynthesis and building of polymer based structures

modelspec

Functionality for specifying models & enabling automatic serialization - will be used by MDF & NeuroMLlite

osb-model-validation

Tools for automated model validation in OpenSourceBrain projects

pipelines

my bioinformatics pipelines

popseq

Preliminary POPSEQ style analysis of progeny of Redgauntlet x Hapil cross

qtl_analysis

Predict phenotype using genotype values using elasticnet or linear model

rjvbio

new utils repo

test_repo

test_repo

vesca_annotation

annotation of the Fragaria vesca Hawaii4 woodland strawberry genome using augustus-with-hints approach, following Jose DeVega's methods

pyNeuroML

A single package in Python unifying scripts and modules for reading, writing, simulating and analysing NeuroML2/LEMS models.

recipes

SBMLShowcase

OSB showcase of interactions between SBML and NeuroML

vesca_v2_annotation

annotation of Fragaria vesca version 2 assembly