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Rob Patro (rob-p)

rob-p

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Company:University of Maryland

Location:College Park, MD

Home Page:http://www.robpatro.net

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Rob Patro's starred repositories

sad

CLI search and replace | Space Age seD

Language:RustLicense:MITStargazers:1696Issues:0Issues:0

range-set-blaze

Integer sets as fast, sorted, integer ranges with full set operations

Language:RustLicense:Apache-2.0Stargazers:68Issues:0Issues:0

arroy

Spotify/Annoy-inspired Approximate Nearest Neighbors in Rust, based on LMDB and optimized for memory usage :boom:

Language:RustLicense:MITStargazers:193Issues:0Issues:0

bio-seq

Bit packed and well-typed biological sequences

Language:RustLicense:MITStargazers:18Issues:0Issues:0

seqproc

Language:RustLicense:BSD-3-ClauseStargazers:4Issues:0Issues:0

parlaylib

A Toolkit for Programming Parallel Algorithms on Shared-Memory Multicore Machines

Language:C++License:MITStargazers:296Issues:0Issues:0

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

Language:RustLicense:MITStargazers:1550Issues:0Issues:0

gxhash

The fastest hashing algorithm 📈

Language:RustLicense:MITStargazers:724Issues:0Issues:0

typst-nsf-templates

Collection of National Science Foundation (NSF) proposal templates: pitches, general applications, etc.

Language:TypstLicense:MITStargazers:8Issues:0Issues:0

sux-rs

Rust implementations of succinct data structures

Language:RustLicense:Apache-2.0Stargazers:39Issues:0Issues:0

websummary

Generate an HTML report in Rust

Language:RustLicense:NOASSERTIONStargazers:5Issues:0Issues:0

scan-rs

Single-cell analysis methods in Rust

Language:RustLicense:NOASSERTIONStargazers:12Issues:0Issues:0

cellranger

10x Genomics Single Cell Analysis

Language:RustLicense:NOASSERTIONStargazers:342Issues:0Issues:0

gbbs

GBBS: Graph Based Benchmark Suite

Language:C++License:MITStargazers:194Issues:0Issues:0

sshx

Fast, collaborative live terminal sharing over the web

Language:RustLicense:MITStargazers:5654Issues:0Issues:0

enclone_ranger

Core components for enclone

Language:RustLicense:NOASSERTIONStargazers:3Issues:0Issues:0

Movi

Fast and cache-efficient full-text pangenome index

Language:C++License:GPL-3.0Stargazers:23Issues:0Issues:0

intspan

Command line tools for IntSpan related bioinformatics operations

Language:RustLicense:MITStargazers:13Issues:0Issues:0

typst

Easily create beautiful preprints in Typst

Language:TypstLicense:MITStargazers:204Issues:0Issues:0

simple-saca

Hardware go brrr bounded context suffix array construction algorithm

Language:RustStargazers:17Issues:0Issues:0

ggetrs

Efficient querying of biological databases

Language:RustLicense:MITStargazers:28Issues:0Issues:0

piscem-infer

Language:RustLicense:BSD-3-ClauseStargazers:14Issues:0Issues:0

samply

Command-line sampling profiler for macOS and Linux

Language:RustLicense:Apache-2.0Stargazers:2041Issues:0Issues:0

data_compression_rs

Rust implementation of the crash course on data compression

Language:RustStargazers:2Issues:0Issues:0

splici

a rust implementation of the splici algorithm to build spliced/unspliced transcripts

Language:RustLicense:MITStargazers:3Issues:0Issues:0

PTRHash

PTRHash minimal perfect hash function, based of PTHash

Language:RustStargazers:32Issues:0Issues:0

sylph

ultrafast genome querying and taxonomic profiling for metagenomic samples by abundance-corrected minhash.

Language:RustLicense:MITStargazers:127Issues:0Issues:0

vers

Succinct data structures using very efficient rank and select

Language:RustLicense:Apache-2.0Stargazers:58Issues:0Issues:0

scidataflow

Command line scientific data management tool

Language:RustLicense:MITStargazers:189Issues:0Issues:0

chrom_mini_graph

Space-efficient minimizer-based pangenome reference graph and haplotype mapping tool

Language:RustStargazers:7Issues:0Issues:0