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rob-a-bolton's repositories

ann2sql

Script to iterate over rows in a SQL database, annotate with MedCATservice, and store in a destination database.

Language:ClojureEPL-2.01 20

gfzf

A wrapper for gfzf using a terminal, so it may be used like dmenu

Language:ShellAGPL-3.01 20

n2c22018t12sql

Tool for importing n2c2 2018 Track 1 "Cohort Selection for Clinical Trials" data into SQL

Language:ClojureNOASSERTION100

awesome-semantic-web

A curated list of various semantic web and linked data resources.

CC0-1.0010

DefinitelyTyped

The repository for high quality TypeScript type definitions.

Language:TypeScriptNOASSERTION000

depickle

Depickle data and output json

Language:PythonGPL-3.0020

hide-minimized

Hide minimized apps from the overview and alt-tab. GNOME shell extension

Language:JavaScriptGPL-3.0010

icd9-to-snomedct

Shell script to create TTL file of annotations to augment an existing ICD9 triple graph to point to SNOMEDCT concepts.

Language:ShellMIT020

fhirclient

JavaScript client for FHIR

Language:TypeScriptNOASSERTION000

formbuilder-lhcforms

Build LHC-Forms and FHIR Questionnaires

NOASSERTION000

ixml-vscode

iXML vscode syntax highlight extension

MIT000

MedCATservice

Running MedCAT as a RESTful web service

Language:Python000

misc-scripts

Loose collection of helper scripts for various desktop things

Language:ShellMIT010

n2c2-2018-track1-sparql

Small pipeline to perform some basic cohort identification on n2c2 2018 track1 data using SPARQL

Language:Shell020

sparql-result-explorer

Simple JavaFX app to highlight different rows returned from JSON SPARQL result files.

Language:Clojure020

umlsmap2rdf

These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files.

Language:PythonMIT010