R. M. Sandu's repositories
segmentation-eval
Extract and evaluate radiomics for liver cancer tumors from DICOM segmentation masks. Using SimpleITK, PyRadiomics and PyDicom.
Ellipsoid-Fit
Approximate a cloud of points (3D/2D) with the inner and outer ellipsoid. Also known as the inner and outer Löwner-John ellipses.
IAT-image-annotation-website
Browser-based image sketchpad for annotating several structures on an image. Output is a JSON/PNG/SVG binary 2D segmentation mask that can be re-loaded.
python-is-cool
Cool Python features for machine learning that I used to be too afraid to use
python-util-scripts
Python Snippets for plotting and saving, reading user input from keyboard, reading DICOM images, reading XML files.
raphael-sketchpad
A simple drawing editor that you can easily include with your forms
surface-distance
Library to compute surface distance based performance metrics for segmentation tasks.
DAMS-dicom-anonymizer
DAMS aka DICOM-Anomymization-Mapping-Script
Awesome-CV
Awesome CV is LaTeX template for your outstanding job application
Cascaded-FCN
Source code for the MICCAI 2016 Paper "Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional NeuralNetworks and 3D Conditional Random Fields"
Cracking-the-Data-Science-Interview
Cracking the Data Science Interview
data-engineer-roadmap
Roadmap to becoming a data engineer in 2021
datadrivencv
R package for building customizable CVs from spreadsheets
Deep-Learning-for-Medical-Applications
Deep Learning Papers on Medical Image Analysis
lesiontrack-website
A website for tracking over time in an organized manner the liver lesions of patients from different sources (images, treatment parameters, clinical data) .
LITS-CHALLENGE
INFORMATION FOR THE LIVER TUMOR SEGMENTATION CHALLENGE
machine-learning-interview
Machine Learning Interviews from FAAG, Snapchat, LinkedIn.
matplotlib_for_papers
Handout for the tutorial "Creating publication-quality figures with matplotlib"
PhD-thesis-template
This is a LaTeX template for the PhD thesis document. It uses EPFL's template for the chapters, and formats the front and last pages according to the University of Bern guidelines.
Pytorch-UNet
Pytorch implementation of the U-Net for image semantic segmentation, with dense CRF post-processing
qam
Library to compute 3D surface-distances for evaluating liver ablation/tumor completeness based on segmentation images.
R-data-analysis
R code for statistical tests
rmsandu.github.io
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SimpleITK-Notebooks
Jupyter notebooks for learning how to use SimpleITK
xml-processing
Repository focused on extracting data from XML log files generated by computer assisted systems used in the OR.