rmorenoayala

herro

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

plassembler

Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates

seqspec

machine-readable file format for genomic library sequence and structure

scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

hybracter

Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.

pypolca

Standalone Python re-implementation of the POLCA polisher from MaSuRCA

uncalled4

evo

Biological foundation modeling from molecular to genome scale

nanopack

An overview of all nanopack tools

gatk

Official code repository for GATK versions 4 and up

clusterProfiler

:bar_chart: A universal enrichment tool for interpreting omics data

oarfish

long read RNA-seq quantification

Liftoff

An accurate GFF3/GTF lift over pipeline

transanno

accurate LiftOver tool for new genome assemblies

TIB-filoinfo

Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México

figtree

Automatically exported from code.google.com/p/figtree

MetONTIIME

A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

purge_dups

haplotypic duplication identification tool

snakemake-novice-bioinformatics

Introduction to Snakemake for Bioinformatics

clean

A nextflow pipeline for decontamination of short reads, long reads and contigs

Filtlong

quality filtering tool for long reads

tidyomics

Easily install and load packages from the tidyomcis ecosystem

cramino

A *fast* tool for BAM/CRAM quality evaluation, intended for long reads

training-material

A collection of Galaxy-related training material

VCFshiny

ribdif

Can individual species be differentiated by amplicon sequencing?

flexiplex

The Flexible Demultiplexer

sdemp

Simple DIY Electronic Music Projects

d3

Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada: