Rajiv McCoy's repositories
dmel-longread-assembly
Analysis code accompanying the paper "Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements." PLoS One. (2014).
egillettii-rnaseq
Data and scripts accompanying 2014 Molecular Ecology paper: http://www.ncbi.nlm.nih.gov/pubmed/24237665
aneuploidy_analysis
Analysis code accompanying the paper "Evidence of selection against complex mitotic-origin aneuploidy during preimplantation development." PLoS Genetics.
neanderthal_ase
Analysis code accompanying the manuscript "Impacts of Neandertal-introgressed sequences on the landscape of human gene expression".
aneuploidy-gwas
Analysis code accompanying the paper "Common variants spanning PLK4 are associated with mitotic-origin aneuploidy in human embryos." Science. (2015).
tripolar_mitosis
Data and code accompanying paper "Tripolar mitosis drives the association between maternal genotypes of PLK4 and aneuploidy in human preimplantation embryos"
aneuploidy_scrnaseq
Detection of aneuploidy using scRNA-seq data from human embryos.
assess-assembly
Scripts to analyze the presence or absence of generic genomic features in a de novo assembly.
ms-introgression
A short program to find introgressed haplotypes in simulated ms (or macs) data.
neand_sQTL
Introgression of splice-altering variation from Neanderthals to modern humans.
python-novice-inflammation
Programming with Python
rmccoy7541.github.io
Origins of Aneuploidy Research Consortium
sqtlviztools
functions for sQTL visualisation