Richardson Laboratory's repositories
MolProbity
Protein and nucleic acid validation service
reference_data
This repository contains reference data from the Richardson Lab at Duke.
disulfide_research
Tools, scripts, and results for research on disulfide bond geometry
identify_dna_decoys
Code to identify potential purid decoys id DNA, i.e. purines that need to flip from syn to anti or viser versa.
lab_scripts
Repository for Q&D lab scripting projects; primarily a repository of scripts not history
PDB_mongodb
This is a repository for a python program that does individual runs on deposited pdbs.
phenix_king_binaries
This hosts static binaries of KiNG for PHENIX. KiNG code is in the javadev repository.
probe_analysis
Tools for analysis and interpretation of Probe output
Protocol-Captures
Archive of lab protocols
quantitate_density_fit
This tool quantifies density fit.
rna_precis
Scripts for RNA parameterization. To be folded into cctbx_project when complete.
cablam_data
Contour data for CaBLAM validation in cctbx and MolProbity
kincontours
Tools for creating 2D or 3D kinemage visualizations from contour tables
magekinjas
javascript viewer for kinemage files, to replace java-based KiNG for web apps
rotarama_data
Contour data for Ramachandran and rotamer validation in cctbx and MolProbity