Anuj Sharma's repositories
BactDating
Bayesian inference of ancestral dates on bacterial phylogenetic trees
BasicBioinformatics
This repo has files and instructions used for the "Basic Bioinformatics and command-line tools for phytopathologists" organized during Plant Health 2020. Unlike the official repo, this repo is constantly being updated.
blast2fasta.sh
Shell script to convert blast XML output (`-outfmt 5`) into FASTA or multiFASTA format.
Custom-themes
Custom themes for Files
CustomPrompts
Custom prompts in multiple console environments
ecology-workshop
Ecology Workshop Overview
ios-akarsh-seggemu-resume
iOS resume application that follows schema of https://jsonresume.org/ to parse the JSON resume file and shows the resume in an iOS application
lesson-example
Example lesson using The Carpentries lesson template.
ngs-bsa
Pipeline for the Next Gen Sequencing Bulked Sequence Analysis pipeline
nursery-dispersal
Code for https://doi.org/10.1094/pdis-05-20-0945-re
oh-my-posh
A prompt theming engine for Powershell
organization-genomics
Project Organization and Management for Genomics
pyani
Application and Python module for average nucleotide identity analyses of microbes.
python-ecology-lesson
Data Analysis and Visualization in Python for Ecologists
QTLseqr
QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
slurm
Slurm: A Highly Scalable Workload Manager
socialsci-workshop
Social Science Workshop Overview
styles
Official repository for Citation Style Language (CSL) citation styles.
vscode-R-syntax
r.json syntax for vscode-R for my custom pipes
WindowsTerminalProfile
My profile for windows terminal
workshop-template
The Carpentries Workshop Template
Zotero-Dark-Theme
userChrome.css file for a Zotero dark theme. Suggestions for improvements are welcome.