rickbeeloo's repositories
GraphiteV2
LMEMs using ccDBG
cuttlefish
Building the compacted de Bruijn graph efficiently from references or reads.
Language:C++BSD-3-Clause000
Language:R000
Language:Julia000
FAIRLLM
Making data more FAIR using LLMs
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fulgor
A fast and compact k-mer index for large-scale matching and color queries.
Language:C++MIT000
FulgorOutput
Parsing and stats on Fulgor output
Language:Rust000
Graphite-1
LMEMs in compacted colored De Bruijn graphs
Language:C000
HeurFuzz
Heuristic filter before fuzzing
Language:Rust000
Interpretzel
Using LLMs to standardize genomic metadata
Language:Python000
llm_client
Rust library for integrating local LLMs (with llama.cpp) and external LLM APIs.
Language:RustMIT000
MinimizerExample
minimizer vs kmers
Language:Python000
PATRIC-carba
The extent of carbapenemase-encoding genes in public genome sequences
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Language:HTML000
rocksdb
A library that provides an embeddable, persistent key-value store for fast storage.
GPL-2.0000
sshash
A compressed, associative, exact, and weighted dictionary for k-mers.
Language:C++MIT000
Language:Rust000
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Language:Rust000
ViewReader.jl
Test newline omit
Language:JuliaMIT000