'pir_params$evidence_filename' absent in 'get_pir_params_filenames'
richelbilderbeek opened this issue · comments
Richèl Bilderbeek commented
Describe the bug
'pir_params$evidence_filename' is absent in 'get_pir_params_filenames'
To Reproduce
Script to reproduce the behavior:
pir_params <- create_test_pir_params()
filenames <- get_pir_params_filenames(pir_params)
expect_true(pir_params$evidence_filename %in% filenames)
Expected behavior
I expect 'pir_params$evidence_filename' to be present in 'get_pir_params_filenames'.
Screenshots
NA
Environment:
Show the results of running the following script:
library(mcbette)
mcbette::mcbette_report()
> mcbette::mcbette_report()
***********
* mcbette *
***********
Can run mcbette: TRUE
OS: unix
****************
* Dependencies *
****************
beautier version: 2.3.5
tracerer version: 2.0.4
beastier version: 2.1.3
mauricer version: 2.0.6
babette version: 2.1.2
**********
* BEAST2 *
**********
Java version: 11.0.6+10-post-Ubuntu-1ubuntu119.10.1
Is BEAST2 installed: TRUE
BEAST2 version: 2.6.1
BEAST2 default path: /home/richel/.local/share/beast/bin/beast
*******************
* BEAST2 packages *
*******************
Is BEAST2 NS package installed: TRUE
BEAST2 NS installed version: 1.1.0
BEAST2 NS latest version: 1.1.0
***************
* sessionInfo *
***************
R version 3.6.1 (2019-07-05)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 19.10
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.8.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.8.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=nl_NL.UTF-8 LC_NAME=nl_NL.UTF-8
[9] LC_ADDRESS=nl_NL.UTF-8 LC_TELEPHONE=nl_NL.UTF-8
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=nl_NL.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.6.1 magrittr_1.5 tools_3.6.1 curl_4.3 rappdirs_0.3.1
[6] beautier_2.3.5 mcbette_1.8.2 mauricer_2.0.6 stringi_1.4.6 beastier_2.1.3
[11] stringr_1.4.0 testit_0.11 rJava_0.9-11
Additional context
None
Richèl Bilderbeek commented
Disagree with this bug report: if there are no candidates, the filename should not pop up.
Instead, give a warning.
Richèl Bilderbeek commented
Issue evolved into #405.
Closing this one.