Rhys Newell's repositories
bioconda-recipes
Conda recipes for the bioconda channel.
fftconvolve
Rust implementations of Fast Fourier Transform convolution and correlation for n-dimensional arrays
annembed
data embedding based on approximate nearest neighbour
galah
More scalable dereplication for metagenome assembled genomes
UnityTools
A small collection of tools that multiple projects make use of.
finch-rs
A genomic minhashing implementation in Rust
rhysnewell
Config files for my GitHub profile.
personal_configs
A collection of personal config files for various scenrios (Shell, SSH, etc.)
rhysnewell.github.io
Personal blog and profile website
pynndescent
A Python nearest neighbor descent for approximate nearest neighbors
profile
hugo theme for github splash page
doctave
A batteries-included developer documentation site generator
Groningen-Microbiome
Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen
umap
Uniform Manifold Approximation and Projection
kingfisher-download
Easier download/extract of FASTA/Q read data from the ENA, NCBI, AWS or GCP.
gtdb_genome_filter
Small script to parse and filter out genomes in the GTDB
rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
spacegraphcats
Indexing large assembly graphs -- remember, in space, no one can hear you miao!
drawio-diagrams
Diagrams for draw.io
metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
CAMISIM
CAMISIM: Simulating metagenomes and microbial communities