Giters
Ryan A. Hagenson (rhagenson)

rhagenson

Geek Repo

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27

following

153

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Company:Yale School of Medicine

Location:New Haven, CT

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Organizations
pony-bio
ponylang

Ryan A. Hagenson's repositories

Butte

BoUnds of Time Till Expansion, a computational framework to investigate the SCNA arrival time in the somatic evolution toward the most recent common ancestor of tumor sample(s)

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deconstructSigs

deconstructSigs

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facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

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idris2-tutorial

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Long-Read-Proteogenomics

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

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nextflow-gotchas

A collection of unexpected challenges and learnings with nextflow and nf-core.

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nf-core_configs

Config files used to define parameters specific to compute environments at different Institutions

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quarto-web

Quarto website

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rfcs

:horse: RFCs for changes to Pony

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sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

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verkko

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ziglings

Learn the Zig programming language by fixing tiny broken programs.

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Awesome-CV

:page_facing_up: Awesome CV is LaTeX template for your outstanding job application

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pony-tutorial

:horse: Tutorial for the Pony programming language

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relped

Relatedness Pedigree -- build a pedigree from relatedness

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swsc

swsc implements the Sliding-Window Site Characteristics method of ultraconserved elements (UCEs) detailed by 10.1093/molbev/msy069

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dhall-lang

Maintainable configuration files

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Idris2

A purely functional programming language with first class types

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IRFinder

Detecting intron retention from RNA-Seq experiments

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ms-thesis

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mumdex

MUMdex source code for genome analysis

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NE_nCoV_rapid

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pony-bio

Bioinformatics for the Pony ecosystem

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PSI-Sigma

PSI-Sigma

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rscripts

Random R scripts and utilities I have created. May be useful for others, but no guarantee

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rust-bio-tools

A set of command line utilities based on Rust-Bio.

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sembio-go

Archive of what was once sembio/go

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TMB

Tumor Mutational Burden

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TwentySecondsCurriculumVitae-LaTex

Write Beautiful Curriculum Vitae in LaTex, that ensures twenty seconds reading.

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vscode-zig

Zig language support for VSCode

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