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in development use at your own risk
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this repo is a bit for the quick daily "blasts" to check up on things
- you have a sequence(s) and reference(s) and want to check similarities?
- either check against NCBI (might break depending on your query) or use a set of own files (recommended)
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you get a quick graphical plot in the end (see below)
# local
nextflow run replikation/blastn_so_hot --fasta query.fa --references references.fasta --cores 8 -profile local,docker
# NCBI query
nextflow run replikation/blastn_so_hot --fasta query.fa --cores 8 -profile local,docker
example results
- blastn output gets ploted, and looks like this:
- each "hit region" (hsp) is shown
- chart is not sorted by score or best hit
issues
samples with the exact same name will overlay on the final plot